If you are interested in characterising oligonucleotides, this application note, which shows two methods – RP and AEX – to analyse EGFP mRNA, is highly recommended. Applying the RP analysis excellent peak shapes and recoveries are achieved using a bioinert YMC-Accura Triart Bio C4 column at pH 7 and 80 °C. AEX, as alternative approach, also gives exceptionally sharp peaks using a BioPro IEX QF column with a run time of only 10 minutes!
You can download the full method details here!